[flymine-dev] flymine 11 - ant build-db-userprofile problem
Wolfgang Lugmayr
flymine-dev at flymine.org
Mon, 18 Feb 2008 13:27:23 +0100
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Hi,
when building flymine 11 from scratch the following error occurs when
calling:
(ant build-db-userprofile 2>&1) | tee ant-userprofile.log
:
[load-default-templates] Adding template "gene_agLifecycleExpression"
[load-default-templates] Adding template
"gene_downstreamAdjacentgene_FlyAtlas" [invalid]
[load-default-templates] Adding template "mRNAlocalisationTerm_Genes"
BUILD FAILED
/bioinfodev1/flymine/flymine11/imbuild/application.xml:87:
java.lang.RuntimeException: unknown class name
"org.flymine.model.genomic.Paralogue" while tagging:
org.flymine.model.genomic.Paralogue
doing some ant compile, jar, war etc. ...
and running the same again the error is:
/bioinfodev1/flymine/flymine11/imbuild/application.xml:87:
java.lang.RuntimeException: unknown class name
"org.flymine.model.genomic.ProteinFeature" while tagging:
org.flymine.model.genomic.ProteinFeature
The classes/tables existed in flymine9 but not in 11?
Attached is the logfile of the first run.
Is there an error in
./webapp/src/default-template-queries.xml?
Cheers,
Wolfgang
--
Wolfgang Lugmayr
Research Institute of Molecular Pathology (IMP)
Dr. Bohr-Gasse 7, A-1030 Vienna, Austria
Phone: +43 1 797 30 - 3370
Email: wolfgang.lugmayr@imp.ac.at
http://www.imp.ac.at/
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Content-Disposition: attachment; filename=ant-userprofile.log
Content-Type: text/x-log; name=ant-userprofile.log; charset=UTF-8
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Buildfile: build.xml
-init-project:
-check-for-intermine-properties-file:
-set-release-suffix-not-exists:
-set-release-suffix-exists:
-set-release-suffix:
library.-pre-pre-init:
-pre-pre-init:
library.-pre-init:
webapp.-pre-init:
-pre-init:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/flymine/webapp/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/flymine/webapp/build/tmp
-init-check-for-intermine-properties:
-check-for-intermine-properties:
-init-properties:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/webapp/build/main
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/webapp/build/main
-pre-init-deps:
-init-deps:
[dependencies] ---- Dependency build order:-----------------------
[dependencies] intermine/objectstore/main
[dependencies] intermine/integrate/model/fulldata
[dependencies] intermine/integrate/main
[dependencies] flymine/dbmodel
[dependencies] intermine/web/model/userprofile
[dependencies] intermine/web/main
[dependencies] intermine/webapp/main
[dependencies] intermine/webtasks/main
[dependencies] bio/core/main
[dependencies] bio/core/props
[dependencies] bio/postprocess/main
[dependencies] bio/tools/main
[dependencies] bio/webapp
[dependencies] flymine/sitemap
[dependencies] ---------------------------------------------------
[dependencies] Executing "jar" for source "intermine/objectstore/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/objectstore/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/integrate/model/fulldata" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/integrate/model/fulldata
-init-project:
-pre-pre-init:
library.-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
library.-init-generate:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/intermine/integrate/model/fulldata/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/intermine/integrate/model/fulldata/build/tmp
-define-task-classpath:
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
-load-int-tasks:
[echo] Loading integration tasks
-load-web-tasks:
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-init-model-out-of-date:
-init-macrodef-model-generation:
-init-generate:
-pre-generate:
build-model-from-xml-in-build-dir:
build-model-from-xml-in-project-dir:
build-model-from-xmi:
build-model-from-zargo:
[echo] Found zargo file
build-model-from-xmlschema:
-generate-model-java-message:
[echo] generated model java is up to date - not regenerating
-init-macrodef-model-output:
generate-model-java:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/integrate/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/integrate/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "flymine/dbmodel" in directory: /bioinfodev1/flymine/flymine11/imbuild/../flymine/dbmodel
-init-project:
-pre-pre-init:
library.-pre-init:
model.-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
library.-init-generate:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/flymine/dbmodel/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/flymine/dbmodel/build/tmp
-define-task-classpath:
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
-load-int-tasks:
[echo] Loading integration tasks
-load-web-tasks:
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-init-model-out-of-date:
-init-macrodef-model-generation:
model.-init-generate:
-init-generate:
-check-for-intermine-properties-file:
-set-release-suffix-not-exists:
-set-release-suffix-exists:
-set-release-suffix:
-init-check-for-intermine-properties:
-check-for-intermine-properties:
-init-properties:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/dbmodel/build/main
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/dbmodel/build/main
-pre-generate-retrieve:
[echo] Retrieving model from os.production...
[dependencies] Not writing "genomic_keyDefs.properties" as version in database is identical to local copy
[dependencies] Model in database is identical to local model.
-pre-generate-properties:
-pre-generate:
[copy] Warning: Could not find file /bioinfodev1/flymine/flymine11/flymine/dbmodel/resources/genomic_*.properties to copy.
build-model-from-xml-in-build-dir:
[echo] Found xml file in /bioinfodev1/flymine/flymine11/flymine/dbmodel/build
build-model-from-xml-in-project-dir:
build-model-from-xmi:
build-model-from-zargo:
build-model-from-xmlschema:
-generate-model-java-message:
-init-macrodef-model-output:
generate-model-java:
[echo] Generating model java code...
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
[javac] Compiling 270 source files to /bioinfodev1/flymine/flymine11/flymine/dbmodel/build/classes
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
[lib:jar] Building jar: /bioinfodev1/flymine/flymine11/flymine/dbmodel/dist/flymine-dbmodel.jar
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/web/model/userprofile" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/web/model/userprofile
-init-project:
-pre-pre-init:
library.-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
library.-init-generate:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/intermine/web/model/userprofile/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/intermine/web/model/userprofile/build/tmp
-define-task-classpath:
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
-load-int-tasks:
[echo] Loading integration tasks
-load-web-tasks:
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-init-model-out-of-date:
-init-macrodef-model-generation:
-init-generate:
-pre-generate:
build-model-from-xml-in-build-dir:
build-model-from-xml-in-project-dir:
[echo] Found xml file in project directory
build-model-from-xmi:
build-model-from-zargo:
build-model-from-xmlschema:
-generate-model-java-message:
[echo] generated model java is up to date - not regenerating
-init-macrodef-model-output:
generate-model-java:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/web/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/web/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/webapp/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/webapp/main
-init-project:
library.-pre-pre-init:
-pre-pre-init:
library.-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/intermine/webapp/main/build/webapp/WEB-INF/lib
-init-presetdef-war:
do-jar:
[war] Building war: /bioinfodev1/flymine/flymine11/intermine/webapp/main/dist/intermine-webapp.war
[war] Warning: selected war files include a WEB-INF/web.xml which will be ignored (please use webxml attribute to war task)
-post-jar:
jar:
[dependencies] Executing "jar" for source "intermine/webtasks/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../intermine/webtasks/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "bio/core/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../bio/core/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "bio/core/props" in directory: /bioinfodev1/flymine/flymine11/imbuild/../bio/core/props
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "bio/postprocess/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../bio/postprocess/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "bio/tools/main" in directory: /bioinfodev1/flymine/flymine11/imbuild/../bio/tools/main
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-init-presetdef-jar:
do-jar:
-post-jar:
jar:
[dependencies] Executing "jar" for source "bio/webapp" in directory: /bioinfodev1/flymine/flymine11/imbuild/../bio/webapp
-init-project:
library.-pre-pre-init:
-pre-pre-init:
library.-pre-init:
webapp.-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-check-for-intermine-properties-file:
-set-release-suffix-not-exists:
-set-release-suffix-exists:
-set-release-suffix:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/bio/webapp/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/bio/webapp/build/tmp
-init-check-for-intermine-properties:
-check-for-intermine-properties:
-init-properties:
-init-check-for-build-properties:
-check-for-build-properties:
-init-app-properties:
-final-app-pre-jar:
webapp.-pre-jar:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/bio/webapp/build/webapp/WEB-INF/lib
-pre-jar:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/bio/webapp/dist
-init-presetdef-war:
-define-task-classpath:
Overriding previous definition of reference to task.class.path
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
-load-int-tasks:
[echo] Loading integration tasks
-load-web-tasks:
[echo] Loading web tasks
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-init-summarise-objectstore:
retrieve-objectstore-summary:
do-jar:
[war] Updating war: /bioinfodev1/flymine/flymine11/bio/webapp/dist/bio-webapp.war
-post-jar:
jar:
[dependencies] Executing "jar" for source "flymine/sitemap" in directory: /bioinfodev1/flymine/flymine11/imbuild/../flymine/sitemap
-init-project:
-pre-pre-init:
-pre-init:
init:
-pre-init-deps:
-init-deps:
-init-compile:
-init-generate:
-pre-generate:
do-generate:
-post-generate:
generate:
-pre-compile:
-init-macrodef-javac:
do-compile-with-gen-src:
do-compile-without-gen-src:
do-compile:
-post-compile:
compile:
-init-jar:
-pre-jar:
-pre-define-task-classpath:
[delete] Deleting directory /bioinfodev1/flymine/flymine11/flymine/sitemap/build/tmp
[mkdir] Created dir: /bioinfodev1/flymine/flymine11/flymine/sitemap/build/tmp
-define-task-classpath:
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
-load-int-tasks:
[echo] Loading integration tasks
-load-web-tasks:
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-check-for-intermine-properties-file:
-set-release-suffix-not-exists:
-set-release-suffix-exists:
-set-release-suffix:
-init-check-for-intermine-properties:
-check-for-intermine-properties:
-init-properties:
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/sitemap/build/main
[copy] Copying 1 file to /bioinfodev1/flymine/flymine11/flymine/sitemap/build/main
-set-sitemap-output:
-init-generate-sitemap:
generate-sitemap:
do-jar:
-post-jar:
jar:
-init-check-for-build-properties:
-check-for-build-properties:
-init-app-properties:
init:
-define-task-classpath:
-check-task-availability:
-load-os-tasks:
[echo] Loading objectstore tasks
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.BuildDbTask.<clinit>(BuildDbTask.java:47)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
-load-int-tasks:
[echo] Loading integration tasks
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.task.CreateIndexesTask.<clinit>(CreateIndexesTask.java:71)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
-load-web-tasks:
[echo] Loading web tasks
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[taskdef] java.util.zip.ZipException: error in opening zip file
[taskdef] at java.util.zip.ZipFile.open(Native Method)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[taskdef] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[taskdef] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.findNextResource(AntClassLoader.java:126)
[taskdef] at org.apache.tools.ant.AntClassLoader$ResourceEnumeration.nextElement(AntClassLoader.java:109)
[taskdef] at org.apache.tools.ant.util.CollectionUtils$CompoundEnumeration.nextElement(CollectionUtils.java:146)
[taskdef] at sun.misc.CompoundEnumeration.nextElement(CompoundEnumeration.java:43)
[taskdef] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:215)
[taskdef] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[taskdef] at org.apache.tools.ant.Task.perform(Task.java:364)
[taskdef] at org.apache.tools.ant.Target.execute(Target.java:341)
[taskdef] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[taskdef] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[taskdef] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[taskdef] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[taskdef] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[taskdef] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[taskdef] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[taskdef] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[taskdef] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
[antlib] java.util.zip.ZipException: error in opening zip file
[antlib] at java.util.zip.ZipFile.open(Native Method)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:114)
[antlib] at java.util.zip.ZipFile.<init>(ZipFile.java:131)
[antlib] at org.apache.tools.ant.AntClassLoader.getResourceURL(AntClassLoader.java:919)
[antlib] at org.apache.tools.ant.AntClassLoader.getResource(AntClassLoader.java:832)
[antlib] at org.apache.log4j.helpers.Loader.getResource(Loader.java:91)
[antlib] at org.apache.log4j.LogManager.<clinit>(LogManager.java:94)
[antlib] at org.apache.log4j.Logger.getLogger(Logger.java:94)
[antlib] at org.intermine.web.task.LoadDefaultTemplatesTask.<clinit>(LoadDefaultTemplatesTask.java:56)
[antlib] at java.lang.Class.forName0(Native Method)
[antlib] at java.lang.Class.forName(Class.java:247)
[antlib] at org.apache.tools.ant.taskdefs.Definer.addDefinition(Definer.java:457)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:183)
[antlib] at org.apache.tools.ant.taskdefs.Antlib.execute(Antlib.java:161)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.taskdefs.Definer.loadAntlib(Definer.java:330)
[antlib] at org.apache.tools.ant.taskdefs.Definer.execute(Definer.java:236)
[antlib] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[antlib] at org.apache.tools.ant.Task.perform(Task.java:364)
[antlib] at org.apache.tools.ant.Target.execute(Target.java:341)
[antlib] at org.apache.tools.ant.Target.performTasks(Target.java:369)
[antlib] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
[antlib] at org.apache.tools.ant.Project.executeTarget(Project.java:1185)
[antlib] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:40)
[antlib] at org.apache.tools.ant.Project.executeTargets(Project.java:1068)
[antlib] at org.apache.tools.ant.Main.runBuild(Main.java:668)
[antlib] at org.apache.tools.ant.Main.startAnt(Main.java:187)
[antlib] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
[antlib] at org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
-load-task-taskdefs:
-init-macrodef-build-db:
-init-task-xml:
-init-build-db:
-do-build-db-userprofile:
[build-db] Our new url -> jdbc:postgresql://localhost:5460/userprofile-flymine11
[build-db] Our new url -> jdbc:postgresql://localhost:5460/userprofile-flymine11
-load-default-templates:
[load-default-templates] Loading default templates and tags into profile lugmayr@imp.ac.at
[load-default-templates] Adding template "A_IdentifierSynonym_Object"
[load-default-templates] Adding template "AllGene_Chromosome"
[load-default-templates] Adding template "All_Genes_In_Organism_To_Publications"
[load-default-templates] Adding template "AnatomyTerm_Region" [invalid]
[load-default-templates] Adding template "CDNAClone_To_Protein_Type_Converter"
[load-default-templates] Adding template "ChromLocation_AmplimerPrimer"
[load-default-templates] Adding template "ChromLocation_AmplimerPrimerPromoter"
[load-default-templates] Adding template "ChromLocation_DrosDelDeletion"
[load-default-templates] Adding template "ChromLocation_Gene"
[load-default-templates] Adding template "ChromLocation_GeneTranscriptExon"
[load-default-templates] Adding template "ChromLocation_GeneTranscriptINDAC"
[load-default-templates] Adding template "ChromLocation_Region" [invalid]
[load-default-templates] Adding template "ChromLocation_RegionOverlappingTFBindingsite"
[load-default-templates] Adding template "ChromLocation_TFBindingSiteLocationGeneFactor"
[load-default-templates] Adding template "ChromosomeLocation_ESTcluster"
[load-default-templates] Adding template "ChromosomeLocation_ESTclusterandESTs"
[load-default-templates] Adding template "ChromosomeLocation_Tiffin"
[load-default-templates] Adding template "Chromosome_AmplimerLocation"
[load-default-templates] Adding template "Chromosome_Gene"
[load-default-templates] Adding template "Chromosome_GeneInsertionLocation"
[load-default-templates] Adding template "Chromosome_IntergenicSequence"
[load-default-templates] Adding template "Chromosome_RegionOverlappingInsertion"
[load-default-templates] Adding template "DRSCScreen_ScreenHit"
[load-default-templates] Adding template "DRSCamplicon_ScreenHit"
[load-default-templates] Adding template "DatasetGiot_ProteinInteractions2"
[load-default-templates] Adding template "Dataset_proteinInteractions"
[load-default-templates] Adding template "Disease_GeneOrthologue"
[load-default-templates] Adding template "Disease_GeneOrthologueEValue"
[load-default-templates] Adding template "DrosDel_GeneLocation"
[load-default-templates] Adding template "DrosDel_LocationGeneTranscriptINDAC"
[load-default-templates] Adding template "ESTaccession_ClusterChromosomelocation"
[load-default-templates] Adding template "ESTclone_LocationDMorthologuePathway" [invalid]
[load-default-templates] Adding template "ESTclone_LocationOverlappingGene"
[load-default-templates] Adding template "ESTclone_LocationOverlappingGeneOrthologue" [invalid]
[load-default-templates] Adding template "ESTclone_LocationOverlappingGeneStructure"
[load-default-templates] Adding template "ESTclone_clusterLocation"
[load-default-templates] Adding template "ESTcluster_DMorthologuePathway" [invalid]
[load-default-templates] Adding template "ESTcluster_ESTSchromosomelocation"
[load-default-templates] Adding template "ESTclustertype_chromosomelocation"
[load-default-templates] Adding template "Exon_To_Gene_Type_Converter"
[load-default-templates] Adding template "FlyFish_Genes"
[load-default-templates] Adding template "GO_name_Gene"
[load-default-templates] Adding template "GOname_GOidentifier"
[load-default-templates] Adding template "GOtermidentifier_name"
[load-default-templates] Adding template "Gene _adjacent genes"
[load-default-templates] Adding template "GeneOrganism1_OrthologueOrganism2" [invalid]
[load-default-templates] Adding template "GeneOrganism_OrthologueRNAi" [invalid]
[load-default-templates] Adding template "GeneSymbol_Identifier"
[load-default-templates] Adding template "GeneTF_TFBindingsites"
[load-default-templates] Adding template "GeneTissue_FlyAtlas" [invalid]
[load-default-templates] Adding template "Gene_DRSCOrthologueRNAiPhenotype" [invalid]
[load-default-templates] Adding template "Gene_DRSCScreenHit"
[load-default-templates] Adding template "Gene_DrosDelDeletion"
[load-default-templates] Adding template "Gene_DrosDelDeletionAvailable"
[load-default-templates] Adding template "Gene_DrosDelDeletionInsertion"
[load-default-templates] Adding template "Gene_ExonLocation2"
[load-default-templates] Adding template "Gene_FlyAtlas" [invalid]
[load-default-templates] Adding template "Gene_FlyAtlasGO" [invalid]
[load-default-templates] Adding template "Gene_FlyFish"
[load-default-templates] Adding template "Gene_GO"
[load-default-templates] Adding template "Gene_INDAC"
[load-default-templates] Adding template "Gene_Identifiers"
[load-default-templates] Adding template "Gene_Insertion"
[load-default-templates] Adding template "Gene_IntronChromosome"
[load-default-templates] Adding template "Gene_Orthologue" [invalid]
[load-default-templates] Adding template "Gene_OrthologueDisease"
[load-default-templates] Adding template "Gene_OrthologueDiseaseEValue"
[load-default-templates] Adding template "Gene_OrthologueDiseaseRNAi" [invalid]
[load-default-templates] Adding template "Gene_OrthologueGO" [invalid]
[load-default-templates] Adding template "Gene_OrthologueOrganism" [invalid]
[load-default-templates] Adding template "Gene_OrthologueProteinInteraction" [invalid]
[load-default-templates] Adding template "Gene_OrthologueRNAi" [invalid]
[load-default-templates] Adding template "Gene_OverlapppingGenes"
[load-default-templates] Adding template "Gene_PointMutationLocation"
[load-default-templates] Adding template "Gene_Probe"
[load-default-templates] Adding template "Gene_Protein"
[load-default-templates] Adding template "Gene_ProteinInteractingproteinConfidenceOtherDetails"
[load-default-templates] Adding template "Gene_ProteinInteractingproteinPfamdomainStructure" [invalid]
[load-default-templates] Adding template "Gene_ProteinStructure" [invalid]
[load-default-templates] Adding template "Gene_RNAiOrthologue" [invalid]
[load-default-templates] Adding template "Gene_RNAiPhenotype"
[load-default-templates] Adding template "Gene_RegionLocation" [invalid]
[load-default-templates] Adding template "Gene_RegionOverlappingTFbindingsite"
[load-default-templates] Adding template "Gene_TFBindingSiteLocationFactor"
[load-default-templates] Adding template "Gene_TFBindingSiteRegionLocation"
[load-default-templates] Adding template "Gene_Tiffin"
[load-default-templates] Adding template "Gene_TilingPathAmplimersLocation"
[load-default-templates] Adding template "Gene_TilingPathSpanAmplimerLocation"
[load-default-templates] Adding template "Gene_TilingPathSpanLocation"
[load-default-templates] Adding template "Gene_TimeCourseResult"
[load-default-templates] Adding template "Gene_TimeCourseResultGeneralStage"
[load-default-templates] Adding template "Gene_TimeCourseResultGeneralStageRatio"
[load-default-templates] Adding template "Gene_TimeCourseResultSpecificStage"
[load-default-templates] Adding template "Gene_TimeCourseResultSpecificStageRatio"
[load-default-templates] Adding template "Gene_To_Exon_Type_Converter"
[load-default-templates] Adding template "Gene_To_KEGG_Pathway_Id"
[load-default-templates] Adding template "Gene_To_MRNA_Type_Converter"
[load-default-templates] Adding template "Gene_To_Protein_Type_Converter"
[load-default-templates] Adding template "Gene_To_Publications"
[load-default-templates] Adding template "Gene_To_Transcript_Type_Converter"
[load-default-templates] Adding template "Gene_TranscriptExon"
[load-default-templates] Adding template "Gene_TranscriptExonIntron"
[load-default-templates] Adding template "Gene_TranscriptExonLocation"
[load-default-templates] Adding template "Gene_TranscriptIntronLocation"
[load-default-templates] Adding template "Gene_TranscriptOrthologue" [invalid]
[load-default-templates] Adding template "Gene_TranscriptTranslation"
[load-default-templates] Adding template "Gene_allGOTerms"
[load-default-templates] Adding template "Gene_chromosomeLocation"
[load-default-templates] Adding template "Gene_paralogues" [invalid]
[load-default-templates] Adding template "Gene_particularGoannotation"
[load-default-templates] Adding template "Gene_pointMutationsInExons"
[load-default-templates] Adding template "Gene_to_upstream_intergenic"
[load-default-templates] Adding template "Gene_transposableElementsOverlappingExons"
[load-default-templates] Adding template "Gene_upstreamAdjacent_FlyAtlas" [invalid]
[load-default-templates] Adding template "Gene_upstreamRegulatoryRegions"
[load-default-templates] Adding template "GeneralStageRatio_agLifecycleExpression"
[load-default-templates] Adding template "GeneralStage_agLifecycleExpression"
[load-default-templates] Adding template "INDAC_GeneLocation"
[load-default-templates] Adding template "Insertion_GeneLocation"
[load-default-templates] Adding template "InterProDomain_ProteinGene" [invalid]
[load-default-templates] Adding template "InterPro_Domain_Family" [invalid]
[load-default-templates] Adding template "Intergenic_RegRegion"
[load-default-templates] Adding template "MRNA_To_Gene_Type_Converter"
[load-default-templates] Adding template "MRNA_To_Protein_Type_Converter"
[load-default-templates] Adding template "OrganismGOterm_GenesTEinsertionsite"
[load-default-templates] Adding template "OrganismGoterm_genesDrosDelDeletion"
[load-default-templates] Adding template "OrganismGoterm_genesPointMutations"
[load-default-templates] Adding template "Organism_3UTR"
[load-default-templates] Adding template "Organism_5UTR"
[load-default-templates] Adding template "Organism_Gene"
[load-default-templates] Adding template "Organism_GeneDomain" [invalid]
[load-default-templates] Adding template "Organism_GeneLocation"
[load-default-templates] Adding template "Organism_GenePointMutation"
[load-default-templates] Adding template "Organism_GeneProteinStructure" [invalid]
[load-default-templates] Adding template "Organism_GoTermEC_Gene"
[load-default-templates] Adding template "Organism_GoTerm_Gene"
[load-default-templates] Adding template "Organism_GoTerm_GeneWithannotation"
[load-default-templates] Adding template "Organism_Intergenic"
[load-default-templates] Adding template "Organism_Interpro" [invalid]
[load-default-templates] Adding template "Organism_Protein"
[load-default-templates] Adding template "Organism_ProteinDomain" [invalid]
[load-default-templates] Adding template "Organism_ProteinInteraction"
[load-default-templates] Adding template "Organism_TFBindingSiteLocationFactor"
[load-default-templates] Adding template "Organism_Transcript"
[load-default-templates] Adding template "PFam_ProteinStructure" [invalid]
[load-default-templates] Adding template "Pathway_Genes"
[load-default-templates] Adding template "Pathway_GenesOrthol" [invalid]
[load-default-templates] Adding template "Pathway_GenesOrtholEST" [invalid]
[load-default-templates] Adding template "PointMutation_Gene_Chromosome"
[load-default-templates] Adding template "ProbeSet_FlyAtlas" [invalid]
[load-default-templates] Adding template "Probe_Gene"
[load-default-templates] Adding template "Protein12_GeneTFBindingSite"
[load-default-templates] Adding template "ProteinInteractionOrganism_ProteinInteractionOrganism" [invalid]
[load-default-templates] Adding template "ProteinInteraction_OrthologueOrganism" [invalid]
[load-default-templates] Adding template "Protein_GOterms"
[load-default-templates] Adding template "Protein_Gene"
[load-default-templates] Adding template "Protein_GeneChromosomeLength"
[load-default-templates] Adding template "Protein_Interpro" [invalid]
[load-default-templates] Adding template "Protein_Orthologue_RNAi" [invalid]
[load-default-templates] Adding template "Protein_PDBStructure"
[load-default-templates] Adding template "Protein_ProteinInteraction"
[load-default-templates] Adding template "Protein_ProteinInteractionDmRNAi" [invalid]
[load-default-templates] Adding template "Protein_ProteinInteractionOrthologue" [invalid]
[load-default-templates] Adding template "Protein_ProteinInteractionOrthologueRNAi" [invalid]
[load-default-templates] Adding template "Protein_Structure" [invalid]
[load-default-templates] Adding template "Protein_To_CDNAclone_Type_Converter"
[load-default-templates] Adding template "Protein_To_Gene_Type_Converter"
[load-default-templates] Adding template "Protein_To_MRNA_Type_Converter"
[load-default-templates] Adding template "Protein_To_Transcript_Type_Converter"
[load-default-templates] Adding template "RNAiPhenotype_GeneOrthologue" [invalid]
[load-default-templates] Adding template "RNAi_Gene"
[load-default-templates] Adding template "SpecificStageRatio_agLifecycleExpression"
[load-default-templates] Adding template "SpecificStage_agLifecycleExpression"
[load-default-templates] Adding template "Stage_FlyFish"
[load-default-templates] Adding template "TFBindingSite_GeneFactor"
[load-default-templates] Adding template "Technique_PDBstructure"
[load-default-templates] Adding template "TiffinBSmotif_locations"
[load-default-templates] Adding template "TilingPathSpan_GeneLocation"
[load-default-templates] Adding template "TimeCourseDataGeneralStageRatio_genes"
[load-default-templates] Adding template "TimeCourseDataGeneralStage_genes"
[load-default-templates] Adding template "TimeCourseDataSpecificStageRatio_genes"
[load-default-templates] Adding template "TimeCourseDataSpecificStage_genes"
[load-default-templates] Adding template "Tissue_Flyatlas" [invalid]
[load-default-templates] Adding template "Transcript_INDAC"
[load-default-templates] Adding template "Transcript_To_Gene_Type_Converter"
[load-default-templates] Adding template "Transcript_To_Protein_Type_Converter"
[load-default-templates] Adding template "TranscriptionFactor_Genes"
[load-default-templates] Adding template "Transcriptionfactor_TFBindingSiteChromosomeGene"
[load-default-templates] Adding template "Translation_To_Gene_Type_Converter"
[load-default-templates] Adding template "Translation_To_Protein_Type_Converter"
[load-default-templates] Adding template "Translation_To_Transcript_Type_Converter"
[load-default-templates] Adding template "UnalignedESTclusters"
[load-default-templates] Adding template "allGO_GeneOrganism"
[load-default-templates] Adding template "flyreg_info"
[load-default-templates] Adding template "geneGeneralStageRatio_agLifecycleExpression"
[load-default-templates] Adding template "geneGeneralStage_agLifecycleExpression"
[load-default-templates] Adding template "geneSpecificStageRatio_agLifecycleExpression"
[load-default-templates] Adding template "geneSpecificStage_agLifecycleExpression"
[load-default-templates] Adding template "gene_adjacentgenes_allflyatlas" [invalid]
[load-default-templates] Adding template "gene_agLifecycleExpression"
[load-default-templates] Adding template "gene_downstreamAdjacentgene_FlyAtlas" [invalid]
[load-default-templates] Adding template "mRNAlocalisationTerm_Genes"
BUILD FAILED
/bioinfodev1/flymine/flymine11/imbuild/application.xml:87: java.lang.RuntimeException: unknown class name "org.flymine.model.genomic.Paralogue" while tagging: org.flymine.model.genomic.Paralogue
Total time: 37 seconds
--=-rH7SK11qRjSLp6QktYC5--